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Publications

Scientific publications by E.G. Timoshenko (1989-2008)

 

  1. G. Bellesia, M.V. Fedorov, E.G. Timoshenko. "Structural transitions in model beta-sheet tapes." J. Chem. Phys., Vol. 128, 195105, 7 pages, (2008).

  2. S.Elli, G. Raffaini, F. Ganazzoli, E.G. Timoshenko, Yu.A. Kuznetsov. "Surface adsorption of comb polymers by Monte Carlo simulations."Polymer, Vol. 49, No 6, pp. 1716-1724 (2008).

  3. S. Elli, F. Ganazzoli, E.G. Timoshenko, Yu.A. Kuznetsov. "Modeling of comb polymers with a high branching density." In: Research activities on High Performance Computing Clusters at CILEA 2006", pp. 27-38, Publisher: CILEA, ISBN 978-88-88971-12-4, Italy, 2007. 

  4. E.G. Timoshenko, Yu.A. Kuznetsov, G.E. Simonov. "Conformations of isolated ampholytic dendrimers in solutions." Physica A, Vol. 379, No 1, pp. 23-31 (2007).

  5. G. Bellesia, M.V. Fedorov, E.G. Timoshenko. "Molecular Dynamics study of structural properties of beta-sheet assemblies formed by synthetic de novo oligopeptides." Physica A, Vol. 373, pp. 455-476 (2007).

  6. G.N. Chuev, M.V. Fedorov, H.J. Luo, D. Kolb, E.G. Timoshenko. "3D wavelet treatment of solvated bipolaron and polaron." J. Theor. Computat. Chem., Vol. 4, No. 3, pp. 751-767 (2005).

  7. R. Connolly, G. Bellesia, E.G. Timoshenko, Yu.A. Kuznetsov, S. Elli, F. Ganazzoli. "'Intrinsic' and 'topological' stiffness in branched polymers."Macromolecules, Vol. 38, No 12, pp. 5288 - 5299 (2005).

  8. G. Bellesia, M.V. Fedorov, Yu.A. Kuznetsov, E.G. Timoshenko. "Structure and stability of chiral beta-tapes: a computational coarse-grained approach." J. Chem. Phys. Vol. 122, No 13, pp. 134901 - 134901-10 (2005).

  9. M.V. Fedorov, G.N. Chuev, Yu.A. Kuznetsov, E.G. Timoshenko. "Wavelet treatment of the intra-chain correlation functions of homopolymers in dilute solutions." Phys. Rev. E Vol. 70, No 5, pp. 051803 - 051803-13 (2004).

  10. R. Connolly, E.G. Timoshenko, Yu.A. Kuznetsov. "Monte Carlo simulations of amphiphilic co-dendrimers in dilute solution." Macromolecules, Vol. 37, No 19, pp. 7381-7392 (2004).

  11. E.G. Timoshenko. "Super Gaussian Self-Consistent method for systems with a two-body Hamiltonian." The Proceedings of "The XVIIth International QFTHEP Workshop," 4-11 September 2003, Samara-Saratov, Russia, Skobeltsyn Institute of Nuclear Physics, MSU, MSU Publishing Co., (M. Dubinin, V. Savrin eds.), pp. 443-449 (2004).

  12. S. Elli, F. Ganazzoli, E.G. Timoshenko, Yu.A. Kuznetsov, R. Connolly. "Size and persistence length of molecular bottle-brushes by Monte Carlo simulations." J. Chem. Phys. Vol. 120, No 13, pp. 6257-6267 (2004).

  13. R. Connolly, E.G. Timoshenko, Yu.A. Kuznetsov. "Monte Carlo simulations of infinitely dilute solutions of amphiphilic diblock star copolymers." J. Chem. Phys. Vol. 119, No 16, pp. 8736-8746 (2003).

  14. E.G. Timoshenko, Yu.A. Kuznetsov, R.N. Basovsky. "Comparison of the energy histograms and conformations between different models of copolymers on lattice." J. Non-Cryst. Solids, Vol. 315, No 3, pp. 304-311 (2003).

  15. E.G. Timoshenko, Yu.A. Kuznetsov, R. Connolly. "Conformations of dendrimers in dilute solution." J. Chem. Phys. Vol. 117, No 19, pp. 9050-9062 (2002).

  16. E.G. Timoshenko, Yu.A. Kuznetsov. "Improved Gaussian self-consistent method - Applications to homopolymers with different architectures in dilute solution." J. Chem. Phys. Vol. 117, No 11, pp. 5404-5414 (2002).

  17. E.G. Timoshenko, Yu.A. Kuznetsov, R. Connolly. "Intra-chain correlation functions and shapes of homopolymers with different architectures in dilute solution." J. Chem. Phys., Vol. 116, No 9, pp. 3905-3916 (2002).

  18. E.G. Timoshenko, Yu.A. Kuznetsov. "Equilibrium and kinetics at the coil-to-globule transition of star and comb heteropolymers in infinitely dilute solutions." Colloids and Surfaces A, Vol. 190, No 1-2, pp. 135-144 (2001).

  19. E.G. Timoshenko, R.N. Basovsky, Yu.A. Kuznetsov. "Micellisation vs aggregation in dilute solutions of amphiphilic heteropolymers." Colloids and Surfaces A, Vol. 190, No 1-2, pp. 129-134 (2001).

  20. F. Ganazzoli, Yu.A. Kuznetsov, E.G. Timoshenko. "Conformations of amphiphilic diblock star copolymers." Macromol. Theory Simul. Vol. 10, No 4, pp. 325-338 (2001).

  21. E.G. Timoshenko, Yu.A. Kuznetsov. "Aggregation number distributions and mesoglobules in dilute solutions of diblock and triblock copolymers." EuroPhys. Lett. Vol. 53, No 3, pp. 322-327 (2001).

  22. Yu.A. Kuznetsov, E.G. Timoshenko. "Influence of reptations on conformations of the homopolymer in Monte Carlo simulation." Progr. Colloid Polym. Sci. Vol. 115, No 30, pp. 146-150 (2000). In: Trends in Colloid and Interface Science XIV, 2000, Volume 115, ISBN: 978-3-540-67128-2. DOI: https://doi.org/10.1007/3-540-46545-6_30

  23. E.G. Timoshenko, Yu.A. Kuznetsov. "Study of mesoglobules in solutions of amphiphilic heteropolymers." Progr. Colloid Polym. Sci. Vol. 115, No 4, pp. 117-120 (2000). In: Trends in Colloid and Interface Science XIV, 2000, Volume 115, ISBN: 978-3-540-67128-2. DOI: https://doi.org/10.1007/3-540-46545-6_24 

  24. D.E. Jennings, Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "A lattice model Monte-Carlo study of coil-to-globule and other conformational transitions of polymer, amphiphile and solvent." J. Chem. Phys. Vol. 112, No 17, pp. 7711-7722 (2000). 

  25. E.G. Timoshenko, Yu.A. Kuznetsov. "Analysis of stability of macromolecular clusters in dilute heteropolymer solutions." J. Chem. Phys. Vol. 112, No 18, pp. 8163-8175 (2000).

  26. E.G. Timoshenko, Yu.A. Kuznetsov. "On the toroidal and crystalline globules in dilute homopolymer solutions." Europhys. Conf. Abs. Vol. 23H, pp. 130-131 (1999). 

  27. Yu.A. Kuznetsov, E.G. Timoshenko. "On the conformational structure of a stiff homopolymer." J. Chem. Phys. Vol. 111, No 8, pp. 3744-3752 (1999).

  28. N.A. Sveshnikov, E.G. Timoshenko. "Dependence of the partition function on the boundary condition and confinement in the gauge field theory." pp. 150-164, In: "Modern problems of Quantum Theory." Eds: V.I. Savrin, O.A. Khrustalev. (In Russian and English). Nuclear Physics Institute, Moscow M.V. Lomonosov State University Publ., No 98-23/524, Moscow, Russia (1998).

  29. R.G. Reilly, M.T. Kechadi, K.A. Dawson, Yu.A. Kuznetsov, E.G. Timoshenko. "Using recurrent neural networks to predict aspects of 3D structure of folded copolymer sequences." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2565-2573 (1998). DOI: https://doi.org/10.48550/arXiv.2407.11493

  30. M.T. Kechadi, R.G. Reilly, K.A. Dawson, Yu.A. Kuznetsov, E.G. Timoshenko. "A study of sequence distribution of a painted globule as a model for proteins with good folding properties." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2383-2391 (1998). DOI: https://doi.org/10.48550/arXiv.cond-mat/0104440 

  31. D.E. Jennings, Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Further investigations into conformational transitions in a lattice model of three-component mixtures of solvent, amphiphile and soluble polymers." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2365-2382 (1998).

  32. A. Byrne, E.G. Timoshenko, K.A. Dawson. "Simulations of homopolymer collapse kinetics in dilute solution." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2289-2302 (1998).

  33. Yu.A. Kuznetsov, E.G. Timoshenko. "Self-consistent treatment of copolymers with arbitrary sequences." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2265-2288 (1998). 

  34. E.G. Timoshenko, Yu.A. Kuznetsov. "A non-equilibrium approach for polymer solutions." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2359-2364 (1998). 

  35. N.A. Sveshnikov, E.G. Timoshenko. "Boundary conditions and confinement in the gauge field theory at finite temperature." Theoretical and Mathematical Physics (Russia). Vol. 117, No. 2, pp. 1274-1285 (English issue) [pp. 206-220 (Russian issue)] (1998).

  36. N.A. Sveshnikov, E.G. Timoshenko. "Partition function versus boundary conditions and confinement in the Yang-Mills theory." Phys. Rev. D. Vol. 58, No 8, pp. 085024 -085024-9 (1998).

  37. Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Conformational structure of amphiphilic copolymers in dilute solutions." Physica A. Vol. 257, No 1-4, pp. 61-76 (1998).

  38. D.A. Tikhonov, R.V. Polozov, E.G. Timoshenko, Yu.A. Kuznetsov, A.V. Gorelov, K.A. Dawson. "Hydration of a B-DNA fragment in the method of atom-atom correlation functions in the RISM approximation." J. Chem. Phys. Vol. 109, No 4, pp. 1528-1539 (1998).

  39. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Conformational transitions of heteropolymers in dilute solutions." Phys. Rev. E. Vol 57, No 6, pp. 6801-6811 (1998).

  40. D. Jennings, Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Conformational transitions in a lattice model of a three-component mixture of solvent, amphiphile, and soluble polymers." J. Chem. Phys. Vol. 108, No 4, pp. 1702-1709 (1998).

  41. N.A. Sveshnikov, E.G. Timoshenko. "Boundary effects and confinement in the gauge field theory." The Proceedings of "XII International HEPQFT Workshop." Samara, Russia, 4 - 10 September 1997. (B.B. Levchenko, ed.), (Moscow), pp. 341-344, NPI MSU, MSU Publishing Co. (1998).

  42. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Simple Models of Biological Macromolecules." The Proceedings of "XII International HEPQFT Workshop." Samara, Russia, 4 - 10 September 1997. (B.B. Levchenko, ed.), (Moscow), pp. 489-495, NPI MSU, MSU Publishing Co. (1998).

  43. K.A. Dawson, A.V. Gorelov, E.G. Timoshenko, Yu.A. Kuznetsov, A. Du Chesne. "Formation of mesoglobules from phase separation in dilute polymer solutions; A study in experiment, theory, and applications." Physica, Vol. A 244, pp. 68-80 (1997). 

  44. D.A. Tikhonov, R.V. Polozov, A.V. Gorelov, E.G. Timoshenko, Yu.A. Kuznetsov, L.A. Panchenko, K.A. Dawson. "Hydration of the B-DNA fragment, d(GGGGG). Integral equation theory of liquids." (In Russian). Biophysics (Russia), Vol. 42, No 5, pp. 1066-1078 (1997).

  45. D.A. Tikhonov, R.V. Polozov, A.V. Gorelov, E.G. Timoshenko, Yu.A. Kuznetsov, L.A. Panchenko, K.A. Dawson. "Integral equations theory of liquids for studying of hydration of macromolecules." (In Russian). Biophysics (Russia), Vol. 42, No 5, pp. 1054-1065 (1997).

  46. A. Byrne, E.G. Timoshenko, K.A. Dawson. "Monte Carlo simulation for the kinetics of collapse and phase separation in homopolymer solutions." Physica, Vol. A 243, No 1-2, pp. 14-24 (1997).

  47. E.G. Timoshenko, Yu.A. Kuznetsov, A. Moskalenko, K.A. Dawson. "Self-consistent approaches for the protein folding problem: kinetics and equilibrium properties of random copolymers." Progr. Theor. Phys. Suppl. (Japan), Vol. 126, pp. 321-327, (1997).

  48. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "A nonequilibrium approach for random amphiphilic copolymer model." J. Stat. Phys., Vol. 89, No 1-2, pp. 347-367 (1997).

  49. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Gaussian self-consistent approach to multichain polymer systems." Physica, Vol. A 240, No 3-4, pp. 432-442 (1997).

  50. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Phase diagram of a Gaussian random copolymer." Phys. Rev., Vol. E 55, No 5, pp. 5750-5758, (1997).

  51. K.A. Dawson, E.G. Timoshenko, Yu.A. Kuznetsov. "Kinetics of conformational transitions of a single polymer chain." Physica, Vol. A 236, No 1-2, pp. 58-74 (1997).

  52. Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Equilibrium and kinetic phenomena in a stiff homopolymer and possible applications to DNA." J. Chem. Phys. 105, No 16, pp. 7116-7134 (1996).

  53. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Kinetics of a Gaussian random copolymer as a prototype for protein folding." Phys. Rev. E 54, No 4, pp. 4071-4086 (1996).

  54. K.A. Dawson, E.G. Timoshenko, Yu.A. Kuznetsov. "The kinetic laws for polymer collapse and biopolymer folding." Macromolecular Symposia, Vol. 106, pp. 91-102 (1996).

  55. Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Kinetic laws at the collapse transition of a homopolymer." J. Chem. Phys., Vol. 104, No 9, pp. 3338-3347 (1996).

  56. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Gaussian self-consistent method for the kinetics of heteropolymers: A direction in studying the protein folding problem." Phys. Rev., Vol. E 53, No 4, pp. 3886-3899 (1996).

  57. Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "New orientationally ordered phases of a homopolymer." J. Chem. Phys., Vol. 104, No 1, pp. 336-341 (1996).

  58. Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Kinetics at the collapse transition of homopolymers and random copolymers." J. Chem. Phys., Vol. 103, No 11, pp. 4807-4818 (1995).

  59. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Kinetics at the collapse transition. Gaussian self-consistent approach." J. Chem. Phys., Vol. 102, No 4, pp. 1816-1823 (1995).

  60. E.G. Timoshenko, K.A. Dawson. "Equilibrium properties of polymers from the Langevin equation: Gaussian self-consistent approach." Phys. Rev., Vol. E 51, No 1, pp. 492-498 (1995).

  61. E.G. Timoshenko. "Wilson loop for SU(N)-gluodynamics." Problems on High Energy Physics and Quantum Field Theory - Proceedings of the XV Workshop, IHEP, Protvino, pp. 169-174 (1995).

  62. N.A. Sveshnikov, E.G. Timoshenko. "Confinement phase transition in gluodynamics via variables at infinity." Problems on High Energy Physics and Quantum Field Theory - Proceedings of the XV Workshop, IHEP, Protvino, pp. 162-168 (1995).

  63. K.A. Dawson, E.G. Timoshenko, P. Kiernan. "Theoretical and experimental approaches to kinetics at the collapse transition of a homopolymer." Il Nuovo Cimento, Vol. D 16, No 7, pp. 675-688 (1994). 

  64. A.V. Gorelov, L.N. Vasil'eva, A. du Chesne, E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Analysis of dynamic light scattering of poly(N-isopropylacrylamide) across the collapse transition." Il Nuovo Cimento, Vol. D 16, No 7, pp. 711-720 (1994).

  65. E.G. Timoshenko. "Dynamics of gauge fields in finite domain." Proceedings of the VIII International Workshop On High Energy Physics and Quantum Field Theory, Zvenigorod, Moscow Region, Russia, 15-21 September 1993. (B.B. Levchenko, ed.), (Moscow), pp. 213-217, NPI MSU, MSU Publishing Co. (1994).

  66. E.G. Timoshenko. "Algebraic confinement and Wilson loop in SU(N) gluodynamics." Phys. Atom. Nucl. [Journal of Nuclear Physics (Russia), pp. 277-284], Vol. 56, No 11, pp. 1613-1616 (1993).

  67. N.A. Sveshnikov, E.G. Timoshenko. "Confinement phase transition in gluodynamics." Physics Letters, Vol. B 289, No 3-4, pp. 423-428 (1992).

  68. E.G. Timoshenko. "Wilson loop for SU(N) gluodynamics." Report NPI MSU 92-17/266, pp. 1-10, Moscow, Russia (1992).

  69. N.A. Sveshnikov, E.G. Timoshenko. "Confinement phase transition in gluodynamics." Report IHEP 92-31, pp. 1-30, Serpukhov, Russia (1992).

  70. N.A. Sveshnikov, E.G. Timoshenko. "Confinement phase transition mechanism of SU(2)-gluodynamics." Report IHEP 91-140, pp. 1-13, Serpukhov, Russia (1991).

  71. E.G. Timoshenko. "Reflections about God or the World through a physicist's eyes." Social Sciences and Contemporaneousness. Academy of Sciences USSR. (Moscow). ISSN:  01323458.  Vol. 2, pp. 119-130 (1991).  [English translation]. DOI: https://doi.org/10.6084/m9.figshare.25684704

  72. G.A. Sardanashvily, E.G. Timoshenko. "Gauge model of the fifth force." (In Russian). The Bulletin of Moscow State University, Series 3, Physics and astronomy, Vol. 31, No 4, pp. 70-72 (1990). [English translation]. DOI: https://doi.org/10.48550/arXiv.2407.09195

  73. G.A. Sardanashvily, E.G. Timoshenko. "Caustics type of gravitational singularities." (In Russian). The Bulletin of Moscow State University, Series 3, Physics and astronomy, Vol. 30, No 3, pp. 75-77 (1989).

​       [English translation]. DOI: https://doi.org/10.48550/arXiv.2407.12954

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Electronic publications on arXiv.org

​

1. arXiv:2407.11493 [cond-mat.soft]

Using recurrent neural networks to predict aspects of 3-D structure of folded copolymer sequences.  

R. G. Reilly, M.-T. Kechadi, Yu. A. Kuznetsov, E. G. Timoshenko, K. A.  Dawson. 

Comments: 10 pages, 4 postscript figures

Subjects: Soft Condensed Matter (cond-mat.soft); Disordered Systems and Neural Networks (cond-mat.dis-nn); Statistical Mechanics (cond-mat.stat-mech); Computational Physics (physics.comp-ph)

Related DOI: https://doi.org/10.48550/arXiv.2407.11493

 

2. arXiv:2407.12954 [gr-qc]

Caustics type of gravitational singularities. 

G. A. Sardanashvily, E. G. Timoshenko.

Comments: 4 pages. Translated from Russian by author on 07.07.2024

Subjects: General Relativity and Quantum Cosmology (gr-qc)

Related DOI: https://doi.org/10.48550/arXiv.2407.12954

 

3. arXiv:2407.09195 [gr-qc]

Gauge model of the fifth force. 

G. A. Sardanashvily, E. G. Timoshenko. 

Comments: 5 pages. Translated from Russian by author on 09.07.2024

Subjects: General Relativity and Quantum Cosmology (gr-qc); Statistical Mechanics (cond-mat.stat-mech)

Related DOI:  https://doi.org/10.48550/arXiv.2407.09195

​

4. arXiv:2405.13189 [cond-mat.stat-mech]

Boundary effects and confinement in the theory of nonabelian gauge fields. 

E. G. Timoshenko. 

Comments: PhD thesis, Translated from Russian. Moscow M.V. Lomonosov State University. Defended on: 27.04.1995. 77 pages, 5 figures. Supervisor: N.A. Sveshnikov

Subjects: Statistical Mechanics (cond-mat.stat-mech); High Energy Physics - Theory (hep-th)

Related DOI: https://doi.org/10.48550/arXiv.2405.13189

 

5.  arXiv:cond-mat/0501285 

Structure and stability of chiral beta-tapes: a computational coarse-grained approach.

G. Bellesia, M. V. Fedorov, Yu. A. Kuznetsov, E. G. Timoshenko.

Comments: 24 pages, 5 PS figures. Accepted to J. Chem. Phys

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Biomolecules (q-bio.BM)

Related DOI: https://doi.org/10.1063/1.1866012

​

6.  arXiv:cond-mat/0410017 

Wavelet treatment of the intra-chain correlation functions of homopolymers in dilute solutions.

M. V. Fedorov, G. N. Chuev, Yu. A. Kuznetsov, E. G.Timoshenko.

Comments: RevTeX, 19 pages, 7 PS figures. Accepted for publication in PRE

Subjects: Statistical Mechanics (cond-mat.stat-mech); Soft Condensed Matter (cond-mat.soft)

Related DOI: https://doi.org/10.1103/PhysRevE.70.051803

 

7.  arXiv:cond-mat/0308374 

Monte Carlo simulations of infinitely dilute solutions of amphiphilic diblock star copolymers.

R. Connolly, E. G. Timoshenko, Yu. A. Kuznetsov.

Comments: 12 pages, 11 ps figures. Accepted for publication in J. Chem. Phys

Subjects: Soft Condensed Matter (cond-mat.soft)

Related DOI: https://doi.org/10.1063/1.1610445

 

8.  arXiv:cond-mat/0208519 

Conformations of dendrimers in dilute solution.

E. G. Timoshenko, Yu. A. Kuznetsov, R. Connolly.

Comments: RevTeX, 14 pages, 19 PS figures, Accepted for publication in J. Chem. Phys

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)

Related DOI: https://doi.org/10.1063/1.1514571

 

9.  arXiv:cond-mat/0207204 

Improved Gaussian self-consistent method - Applications to homopolymers with different architectures in dilute solution.

E. G. Timoshenko, Yu. A. Kuznetsov.

Comments: RevTeX 13 pages, 9 PS figures. Accepted for publication in J. Chem. Phys

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)

Related DOI: https://doi.org/10.1063/1.1500357

 

10.  arXiv:cond-mat/0112229 

Intra-chain correlation functions and shapes of homopolymers with different architectures in dilute solution.

E. G. Timoshenko, Yu.  A. Kuznetsov, R. Connolly.

Comments: RevTeX 12 pages, 10 PS figures. Accepted by J. Chem. Phys

Subjects: Soft Condensed Matter (cond-mat.soft)

Related DOI: https://doi.org/10.1063/1.1448490

​

11.  arXiv:cond-mat/0108440 

Comparison of the energy histograms and conformations between different models of copolymers on lattice.

E. G. Timoshenko, Yu. A. Kuznetsov, R. N. Basovsky.

Comments: 11 pages, 6 PS figures. Submitted to J. Non-Cryst. Solids

Subjects: Soft Condensed Matter (cond-mat.soft); Disordered Systems and Neural Networks (cond-mat.dis-nn); Quantitative Biology (q-bio)

Related DOI: https://doi.org/10.1016/S0022-3093(02)01612-5

 

12.  arXiv:cond-mat/0104495 

Self-consistent Treatment of Copolymers with Arbitrary Sequences.

Yu. A. Kuznetsov, E. G. Timoshenko.

Comments: 16 pages, 25 PS figures

Journal-ref: Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2265-2288 (1998)

Subjects: Soft Condensed Matter (cond-mat.soft); Disordered Systems and Neural Networks (cond-mat.dis-nn); Mesoscale and Nanoscale Physics (cond-mat.mes-hall); Quantitative Biology (q-bio)

Related DOI: https://doi.org/10.48550/arXiv.cond-mat/0104495

 

13.  arXiv:cond-mat/0104440 

A Study of Sequence Distribution of a Painted Globule as a Model for Proteins with Good Folding Properties.

M-T. Kechadi, R. G. Reilly, K. A. Dawson, Yu. A. Kuznetsov, E. G. Timoshenko.

Comments: 11 pages incl. 6 PS figures. Paper presented at the International Conference on Morphology and Kinetics of Phase Separating Complex Fluids, Messina, Italy, June 1997

Journal-ref: Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2383-2391 (1998)

Subjects: Soft Condensed Matter (cond-mat.soft); Disordered Systems and Neural Networks (cond-mat.dis-nn); Quantitative Biology (q-bio)

Related DOI: https://doi.org/10.48550/arXiv.cond-mat/0104440

 

14.  arXiv:cond-mat/0103103 

Micellisation vs aggregation in dilute solutions of amphiphilic heteropolymers.

E. G. Timoshenko, R. Basovsky, Yu. A. Kuznetsov.

Comments: RevTeX, 4 pages, 7 PS figures. Accepted for publication in Colloids and Surfaces A

Subjects: Soft Condensed Matter (cond-mat.soft); Mesoscale and Nanoscale Physics (cond-mat.mes-hall); Statistical Mechanics (cond-mat.stat-mech)

Related DOI: https://doi.org/10.1016/S0927-7757(01)00672-0

 

15.  arXiv:cond-mat/0103102 

Equilibrium and kinetics at the coil-to-globule transition of star and comb heteropolymers in infinitely dilute solutions.

E. G. Timoshenko, Yu. A. Kuznetsov.

Comments: RevTeX, 5 pages, 10 PS figures. Accepted for publication in Colloids and Surfaces A

Subjects: Soft Condensed Matter (cond-mat.soft); Mesoscale and Nanoscale Physics (cond-mat.mes-hall); Statistical Mechanics (cond-mat.stat-mech)

Related DOI: https://doi.org/10.1016/S0927-7757(01)00673-2

 

16. arXiv:cond-mat/0011448 

Conformations of amphiphilic diblock star copolymers.

F. Ganazzoli, Yu. A. Kuznetsov, E. G. Timoshenko.

Comments: RevTeX, 13 pages, 20 PS figures. Accepted for publication in Macromol. Theory Simul

Subjects: Soft Condensed Matter (cond-mat.soft); Mesoscale and Nanoscale Physics (cond-mat.mes-hall); Statistical Mechanics (cond-mat.stat-mech)

Related DOI: https://doi.org/10.1002/1521-3919(20010401)10:4<325::AID-MATS325>3.0.CO;2-2

 

17. arXiv:cond-mat/0011386 

Aggregation number distributions and mesoglobules in dilute solutions of diblock and triblock copolymers.

E. G. Timoshenko, Yu. A. Kuznetsov.

Comments: 4 pages, 4 PS figures. Accepted for publication in EPL

Subjects: Soft Condensed Matter (cond-mat.soft); Disordered Systems and Neural Networks (cond-mat.dis-nn); Statistical Mechanics (cond-mat.stat-mech)

Related DOI: https://doi.org/10.1209/epl/i2001-00156-5

 

18. arXiv:cond-mat/0003087 

Influence of reptations on conformations of the homopolymer in Monte Carlo simulation.

Yu. A. Kuznetsov, E. G. Timoshenko.

Comments: 13 pages, RevTeX, 3 ps figures. Accepted for publication in Progr. Colloid Polym. Sci

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)

In: Trends in Colloid and Interface Science XIV, 2000, Volume 115, ISBN : 978-3-540-67128-2.

Related DOI: https://doi.org/10.1007/3-540-46545-6_30

 

19.  arXiv:cond-mat/0002307 

Analysis of stability of macromolecular clusters in dilute heteropolymer solutions.

E. G. Timoshenko, Yu. A. Kuznetsov.

Comments: 30 pages, RevTeX, 14 ps figures. Accepted for publication in J. Chem. Phys

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)

Related DOI: https://doi.org/10.1063/1.481417

 

20.  arXiv:cond-mat/9906030 

On the conformational structure of a stiff homopolymer.

Yu. A. Kuznetsov, E. G. Timoshenko.

Comments: 9 pages, 16 PS figures. Journal of Chemical Physics, in press

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)

Related DOI: https://doi.org/10.1063/1.479655

 

21.  arXiv:cond-mat/9804176 

Hydration of a B-DNA Fragment in the Method of Atom-atom Correlation Functions with the Reference Interaction Site Model Approximation.

D. A. Tikhonov, R. V. Polozov, E. G. Timoshenko, Yu. A. Kuznetsov, A. V. Gorelov, K. A Dawson.

Comments: 9 pages, RevTeX, 9 pages of ps figures, accepted for publications in JCP

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)

Related DOI: https://doi.org/10.1063/1.476704

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22.  arXiv:cond-mat/9802230 

Conformational transitions of heteropolymers in dilute solutions.

E. G. Timoshenko, Yu. A. Kuznetsov, K. A. Dawson.

Comments: 15 pages, RevTeX, 20 ps figures, accepted for publication in Phys. Rev. E

Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Quantitative Biology (q-bio)

Related DOI: https://doi.org/10.1103/PhysRevE.57.6801

 

23.  arXiv:hep-th/9802161 

The partition function versus boundary conditions and confinement in the Yang-Mills theory.

N. A. Sveshnikov, E. G. Timoshenko.

Comments: 14 pages, RevTeX, submitted to Phys. Rev. D

Journal-ref: Phys.Rev. D58 (1998) 085024

Subjects: High Energy Physics - Theory (hep-th); Statistical Mechanics (cond-mat.stat-mech); High Energy Physics - Phenomenology (hep-ph)

Related DOI: https://doi.org/10.1103/PhysRevD.58.085024

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PhDs supervised to completion by Dr E.G. Timoshenko at UCD

 

  • Nikolaj Georgi, 2005. "Advanced numerical techniques for computer simulations in statistical mechanics of synthetic polymers and biopolymers." 

  • Giovanni Bellesia, 2005. "In silico study of conformational properties of self-assembled structures formed by rationally designed oligopeptides." 

  • Ronan Connolly, 2003. "Conformations of branched polymers." ("BOC gases" award).

  • Roman N. Basovsky, 2002. "Computer simulations of conformational transitions in macromolecular solutions." 

  • Alan A. Byrne, 1999. "The nature of the phase transitions of polymers." 

  • Yuri A. Kuznetsov, 1998. "Theoretical study of equilibrium structures and kinetic phenomena in macromolecular solutions." https://doi.org/10.6084/m9.figshare.17030144

  • Deirdre E. Jennings, 1998. "Conformational transitions of three-component mixtures of polymer, amphiphile and solvent: A Monte Carlo study." 

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